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Package org.broad.igv.data.cufflinks

org.broad.igv.data.cufflinks
Abstract
CufflinksCodec
AsciiFeatureCodec
CufflinksDataSource
Interface
DataSource
CufflinksParser
Parses various cufflinks (and cuffdiff) output files as des cribed here: http://cuffl...
CufflinksTrack
Abstract
DataTrack
Represents a track of numeric data
Abstract
AbstractTrack
Interface
ScalableTrack
Created by jrobinson on 5/3/16 .
Interface
IGVEventObserver
Created by jrobinson on 6/3/16 .
Interface
Track
Interface
Persistable
Interface for a session persis table object.
Abstract
CufflinksValue
Range
Basic class to specify a genom ic interval. Coordinates are intended to be 0-based ha...
Interface
LocusScore
Interface
Feature
ExpDiffCodec
Codec for cufflinks .exp_diff files
ExpDiffValue
FPKMSampleValue
Represents a value from a cuff links file for a single sampl e
FPKMTrackingCodec
Codec for Cufflinks FPKM files , extension fpkm_tracking
FPKMTrackingSampleCodec
Wrapper class to make it easy to just extract the first sam ple from an fpkm_tracking...
FPKMValue
Represents a cufflinks value f rom any of a fpkm tracking fi le as described here http...