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Package org.broad.igv.data

Inner Packages
org.broad.igv.data.cufflinks
org.broad.igv.data.expression
org.broad.igv.data.seg
org.broad.igv.data
AbstractDataParser
Abstract
AbstractDataSource
Interface
DataSource
BasicScore
Interface
LocusScore
Interface
Feature
Interface
Bin
CharArrayList
ChromosomeData
Container for a block of data for a chromosome
ChromosomeSummary
CombinedDataSource
Data source which combines two other DataSources TODO Multi ple DataSources. There is...
CombinedDataSource$Operation
CompositeScore
Interface
CoverageDataSource
DataStatistics
DataTile
Class is public to permit unit testing
Interface
Dataset
A dataset is an in-memory repr esentation of a numerical dat aset. It is used for non-...
DatasetDataSource
GenomeSummaryData
Summarize (using a windowing f unction) numeric data points which are associated with...
IGVDataset
IGVDatasetParser
Class description
NamedScore
SummaryTile
Represents a chunk of data ove r a fixed window span (defaul t == 1)
SummaryTile2D
Represents a chunk of data ove r a fixed window span (defaul t == 1)
WiggleDataset
WiggleParser
Parser for wiggle and "wiggle- like" formats.
ZipUtils