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Package org.broad.igv.feature.genome

Inner Packages
org.broad.igv.feature.genome.fasta
org.broad.igv.feature.genome
ChromSizesParser
ChromosomeComparator
For comparing chromosomes. We order by "important" vs "unim portant". The idea being ...
Interface
Comparator
ChromosomeCoordinate
ChromosomeNameComparator
Comparator for chromosome name s. All pure string comparison s are case insensitive. I...
ColorSpaceSequence
Created with IntelliJ IDEA. Us er: jrobinso Date: 6/25/12 Ti me: 11:00 AM To change th...
GenbankParser
Sequence defined by a Genbank (.gbk) file. These files cont ain a single sequence/chr...
Genome
Simple model of a genome. Keep s an ordered list of Chromoso mes, an alias table, and ...
UI
GenomeBuilderDialog
UI
JDialog
UI
GenomeBuilderPane
UI
JPanel
Interface
Serializable
Abstract
GenomeDescriptor
GenomeException
RuntimeException
GenomeImporter
/
GenomeListItem
A container for specific genom e information which can be us ed to manage loaded genom...
GenomeManager
GenomeServerException
GenomeUtils
Static utility functions for g enome data-wrangling.
GenomeZipDescriptor
IGVSequence
Represents a sequence database composed of plain text files with no white space, one...
Interface
Sequence
InMemorySequence
A sequence implementation in w hich all data is held in memo ry.
JList
JTextArea
Interface
ListCellRenderer
UI
RemoveGenomesDialog
SequenceInterval
Created by jrobinso on 1/7/17.
SequenceWrapper
A wrapper class that provides caching for on-disk, queried, and web-service Sequence...
TwoBitSequence
Created by jrobinso on 6/13/17 .