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Package org.broad.igv.goby

org.broad.igv.goby
This package provides Goby sup port for IGV.
GobyAlignment
A Facade to a Goby alignment e ntry. The facade exposes Goby alignment entries in the...
Interface
Alignment
Interface
LocusScore
Interface
Feature
GobyAlignmentIterator
An iterator over Goby alignmen t entries. IGV iterator retur n entries that fall withi...
Interface
CloseableIterator
GobyAlignmentQueryReader
Query reader to parse Goby ali gnment files. The compact ali gnment files must be sort...
Interface
AlignmentReader
GobyCountArchiveDataSource
A data source for Goby compres sed base-level histograms (.c ounts files).
Interface
CoverageDataSource
Interface
DataSource