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Package org.broad.igv.maf

org.broad.igv.maf
UIAbstract
AbstractMultipleAlignmentDialog
UI
JDialog
MAFIndex
MAFListReader
Implementation of MAFReader fo r MAF files that are split by chromosome (1 file per c...
Interface
MAFReader
MAFParser
MAFRenderer
MAFTile
MAFTileCodec
MAFUtils
MAFtoSAM
Created by jrobinson on 5/5/16 . Parses a MAF file for Align ment records, as opposed ...
MafChunk
MultipleAlignmentBlock
UI
MultipleAlignmentDialog
MultipleAlignmentTrack
Abstract
AbstractTrack
Interface
Track
Interface
Persistable
Interface for a session persis table object.
UI
Multiz44ConfigurationDialog
NOTE: This is hardcoded for th e human 44-way files.