| Generated and automatically maintained for github.com/igvteam/igv by
GitHub Project Badge
Created by jrobinso on 9/22/15 .
Manages data loading for a sin gle alignment file. Shared be tween alignment, coverage...
Created by jrobinson on 6/3/16 .
Basic class to specify a genom ic interval. Coordinates are intended to be 0-based ha...
Packs alignments such that the re is no overlap
A wrapper for an AlignmentQuer yReader that caches query res ults
Interface for a session persis table object.
Created by jrobinson on 5/3/16 .
Genomic interval showing which areas have had reads removed (downsampled)
Developmental track to explore display of conservation scor es.
Created by jrobinso on 2/10/17 .
Some alignment formats are par sed as Features. This is all getting rather circular, ...
Created by jrobinso on 3/22/16 .
Experimental class for phasing alignments for high ploidy r egions.
Created by jrobinso on 12/22/1 6. Experimental class to test strategies for drawing i...
Created by jrobinso on 1/13/17 .
Created by jrobinso on 1/12/17 .
Class for experimenting with 1 0X linked reads.
Convenience class for storing map from group -> list of ali gnments packed into rows ...
Stores objects by position so they can be looked up by inex act position (contains)
Created by jrobinso on 12/20/1 6. Some simple statistics to distinguish dna, rna, and...
A row of alignments, packed to minimize empty space
Write SAM/BAM Alignments to a file or stream
Created by jrobinso on 3/31/16 .
A helper class for computing s plice junctions from alignmen ts. Junctions are filtere...
Track which displays features, typically showing regions of the genome in a qualitat...