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Package org.broad.igv.tools.converters

org.broad.igv.tools.converters
BamToBed
Converts a bam -> a bed file b y writing each record as a be d feature. If the "proper...
CLWtoSAM
Created by jrobinson on 5/5/16 . Parses a MAF file for Align ment records, as opposed ...
ExpressionFormatter
Scales and centers expression data for display in IGV. 1. t ake log2 of data 2. compu...
GCTtoIGVConverter
GFFtoBed
Convert a GFF to a BED file, k eeping the column 9 attribute tags.
IlluminaToCN
User: jrobinso Date: Apr 19, 2 010
MFastaToSAM
Created by jrobinson on 5/5/16 . Parses a MAF file for Align ment records, as opposed ...
MageTabToIGVConverter
WigToBed
Converts a "wig" file to a "be d" file by applying a thresho ld
Interface
DataConsumer