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Package org.broad.igv.track

org.broad.igv.track
Abstract
AbstractTrack
Interface
Track
Interface
Persistable
Interface for a session persis table object.
Abstract
AttributeComparator
Sort tracks by attribute value
Interface
Comparator
AttributeManager
BlatTrack
FeatureTrack
Track which displays features, typically showing regions of the genome in a qualitat...
Interface
IGVEventObserver
Created by jrobinson on 6/3/16 .
CNFreqTrack
UI
CombinedDataSourceDialog
UI
JDialog
DataSourceTrack
Abstract
DataTrack
Represents a track of numeric data
Interface
ScalableTrack
Created by jrobinson on 5/3/16 .
DefaultListCellRenderer
FeatureCollectionSource
Implementation of FeatureSourc e that wraps a list or map of features for the entire ...
Interface
FeatureSource
A queryable source for Feature s. Used by FeatureTrack autho r: jrobinso Date: Jan 31,...
FeatureDirSource
User: jrobinso Date: Jan 31, 2 010
FeatureTrackUtils
GFFCombiner
The GFF spec is available at h ttp://www.sequenceontology.or g/gff3.shtml GFF Combiner...
GFFFeatureSource
User: jacob Date: 2012-Jun-22
GisticTrack
LoadedDataInterval
MergedTracks
Track to serve as a container for several tracks rendered o n top of each other
MutationFeatureSource
MutationTrack
PackedFeatures
Represents a table of features , packed so there is no overl ap. Features are packed i...
PackedFeaturesSpliceJunctions
Range
Created by jrobinson on 5/3/16 .
Enum
RegionScoreType
RenderContext
SelectableFeatureTrack
A FeatureTrack designed for se lecting features/exons. Creat ed to support Sashimi plo...
SequenceTrack
TestUtils
Track$DisplayMode
TrackClickEvent
TrackGroup
Container for a group of track s. Behaves as a single unit w hen sorting by region sco...
TrackLoader
User: jrobinso Date: Feb 14, 2 010
Interface
TrackMenuItemBuilder
Interface to implement when ad ding a context menu item for track context menus
TrackMenuUtils
TrackProperties
This class is based on the UCS C track configuration paramet ers
Interface
TrackReader
TrackSet
Enum
TrackType
Abstract
TribbleFeatureSource
TribbleListFeatureSource
Wraps a collection of FeatureS ource objects, one per chromo some. The class is needed...
Enum
WindowFunction
Interface
CollUtils.Valued