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Package org.broad.igv.maf

UIAbstract
abstract class AbstractMultipleAlignmentDialog
class MAFIndex
class MAFListReader
Implementation of MAFReader fo r MAF files that are split by chromosome (1 file per c...
class MAFParser
Interface
interface MAFReader
class MAFRenderer
class MAFTile
class MAFTileCodec
class MAFUtils
class MAFtoSAM
Created by jrobinson on 5/5/16 . Parses a MAF file for Align ment records, as opposed ...
class MafChunk
class MultipleAlignmentBlock
UI
class MultipleAlignmentDialog
class MultipleAlignmentTrack
UI
class Multiz44ConfigurationDialog
NOTE: This is hardcoded for th e human 44-way files.
Abstract
abstract class AbstractTrack
UI
class JDialog
readerMap 0..* indexblocks 0..* readerrenderertrack