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Package org.broad.igv.track

Abstract
abstract class AbstractTrack
Abstract
abstract class AttributeComparator
Sort tracks by attribute value
class AttributeManager
class BlatTrack
class CNFreqTrack
UI
class CombinedDataSourceDialog
class DataSourceTrack
Abstract
abstract class DataTrack
Represents a track of numeric data
class FeatureCollectionSource
Implementation of FeatureSourc e that wraps a list or map of features for the entire ...
class FeatureDirSource
User: jrobinso Date: Jan 31, 2 010
Interface
interface FeatureSource
A queryable source for Feature s. Used by FeatureTrack autho r: jrobinso Date: Jan 31,...
class FeatureTrack
Track which displays features, typically showing regions of the genome in a qualitat...
class FeatureTrackUtils
class GFFCombiner
The GFF spec is available at h ttp://www.sequenceontology.or g/gff3.shtml GFF Combiner...
class GFFFeatureSource
User: jacob Date: 2012-Jun-22
class GisticTrack
class LoadedDataInterval
class MergedTracks
Track to serve as a container for several tracks rendered o n top of each other
class MutationFeatureSource
class MutationTrack
class PackedFeatures
Represents a table of features , packed so there is no overl ap. Features are packed i...
class PackedFeaturesSpliceJunctions
class Range
Created by jrobinson on 5/3/16 .
Enum
enum RegionScoreType
class RenderContext
Interface
interface ScalableTrack
Created by jrobinson on 5/3/16 .
class SelectableFeatureTrack
A FeatureTrack designed for se lecting features/exons. Creat ed to support Sashimi plo...
class SequenceTrack
class TestUtils
Interface
interface Track
class TrackClickEvent
class TrackGroup
Container for a group of track s. Behaves as a single unit w hen sorting by region sco...
class TrackLoader
User: jrobinso Date: Feb 14, 2 010
Interface
interface TrackMenuItemBuilder
Interface to implement when ad ding a context menu item for track context menus
class TrackMenuUtils
class TrackProperties
This class is based on the UCS C track configuration paramet ers
Interface
interface TrackReader
class TrackSet
Enum
enum TrackType
Abstract
abstract class TribbleFeatureSource
class TribbleListFeatureSource
Wraps a collection of FeatureS ource objects, one per chromo some. The class is needed...
Enum
enum WindowFunction
Interface
interface Persistable
Interface for a session persis table object.
Interface
interface IGVEventObserver
Created by jrobinson on 6/3/16 .
UI
class JDialog
Interface
interface Comparator
defaultRendererMap 0..* singletonloadedIntervalCache 0..* typepackedFeaturesMap 0..* sourcewrappedSourcememberTracks 0..* loadedIntervalCache 0..* tracks 0..* trackMenuItems 0..* windowingFunctiondataTracks 0..* featureSourceMap 0..*